Bioinformatics tutorials

Priority topics currently under development are genome assembly, phylogenomics, variant calling, and RNA-seq.These will appear as items in the left hand panel.

Here are some links to resources that are particularly useful for getting started in plant bioinformatics:

• Unix: Software Carpentry tutorial: http://swcarpentry.github.io/shell-novice/
• Guide to Unix: https://f1000research.com/documents/7-1436
• Python: Software carpentry tutorial: http://swcarpentry.github.io/python-novice-gapminder/
• Biopython: https://biopython.org/
• Solving biological problems with python: http://pycam.github.io/
• R: Software carpentry tutorial: http://swcarpentry.github.io/r-novice-inflammation/
• Git: Software carpentry tutorial: http://swcarpentry.github.io/git-novice/
• Algorithms: Coursera:https://www.coursera.org/learn/dna-sequencing
• Algorithms: Ben Langmead:https://www.youtube.com/user/BenLangmead
• Containers: https://github.com/pawseysc/bio-workshop-18
• Docker: https://www.melbournebioinformatics.org.au/tutorials/tutorials/docker/docker/
• Data Carpentry Genomics Workshop: https://datacarpentry.org/lessons/#genomics-workshop
• ISU Genomics: https://isugenomics.github.io/bioinformatics-workbook/
• Gene expression on Coursera https://www.coursera.org/learn/plant-bioinformatics
• Sequence analysis workshop UCDavis: https://angus.readthedocs.io/en/2018/
• Melbourne Bioinformatics: https://www.melbournebioinformatics.org.au/training-and-events/
• Bioinformatics file formats and ontology: http://bioportal.bioontology.org/ontologies/EDAM
• The Biostar Handbook (not free): https://www.biostarhandbook.com/index.html
• Test yourself! Rosalind bioinformatics problems: http://rosalind.info/problems/locations/